SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    697795, 611344, 611343, 671469, 614832, 
    1088508, 698251, 991893, 614900, 698186, 
    614875, 697903, 614824, 991310, 696234, 
    695078, 614833, 697609, 696257, 1732162
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00180

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "46.06"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "usergroup",
        "used_key_parts": [
          "product_id",
          "usergroup_id",
          "lower_limit"
        ],
        "key_length": "9",
        "rows_examined_per_scan": 40,
        "rows_produced_per_join": 40,
        "filtered": "100.00",
        "cost_info": {
          "read_cost": "42.06",
          "eval_cost": "4.00",
          "prefix_cost": "46.06",
          "data_read_per_join": "960"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`maniamall_cscart`.`cscart_product_prices`.`lower_limit` = 1) and (`maniamall_cscart`.`cscart_product_prices`.`product_id` in (697795,611344,611343,671469,614832,1088508,698251,991893,614900,698186,614875,697903,614824,991310,696234,695078,614833,697609,696257,1732162)) and (`maniamall_cscart`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
611343 363.740000
611344 247.490000
614824 13.740000
614832 27.490000
614833 143.740000
614875 28.740000
614900 67.490000
671469 62.490000
695078 19.990000
696234 28.740000
696257 209.990000
697609 74.990000
697795 8.740000
697903 24.990000
698186 13.740000
698251 31.240000
991310 57.490000
991893 374.990000
1088508 4.990000
1732162 675.630000